Schedule

Date

Topic and papers

Presenter(s) (links point to the presentations)

01/18/06

Introduction to this course (50 min)

Yang Cao

01/20/06

What is modeling and simulation? (50 min)

Yang Cao

01/23/06

From randomness to chemical reaction (75 min)

Yang Cao

01/25/06

Simulation methods for nonstiff ordinary differential equation (75min)

Yang Cao

01/31/06

Stochastic simulation algorithms for biochemical systems Part I

Yang Cao

02/07/06

Stochastic simulation algorithms for biochemical systems Part II

Yang Cao

02/14/06

Gene Expression and Gene Regulation Network

Yang Cao

02/21/06

Randomness in the Cell: Data from Experiments

Yang Cao

02/28/06

biology and network: Kim

Kim and Yang Cao

03/07/06

Spring Break

03/14/06

circadian rhythm: Tongli

Gene regulation at the single level: Ramu

Tongli and Ramu

03/21/06

Introduction to SBML: Ranjit

Mammalian Cell Cycle: Rajat

Ranjit and Rajat

03/28/06

Cell Cycle Control in Caulobacter: Shenghua

Dynamic System in Biology: Yang Cao

Shenghua and Yang Cao

04/04/06

Stiffness: Yang Cao

Yang Cao

04/11/06

Class cancelled for this week

 

04/18/06

Project Presentations: Modeling and Simulation in Synthetic Biology: Ramu

From Math to Biology: a Random Talk: Yang Cao

Ramu and Yang Cao

04/25/06

Project Presentations

Tongli and Rajat

05/2/06

Project Presentations

Ranjit and Shenghua

After

Project Report

All