INFO: 2014-10-28 08:01:48,061: Starting EmbedMotif
INFO: 2014-10-28 08:01:48,063: Arguments sucessfully parsed
INFO: 2014-10-28 08:01:48,068: Output FASTA file is sequences.fasta
INFO: 2014-10-28 08:01:48,068: Motif length is 2
INFO: 2014-10-28 08:01:48,068: Number of don't cares is 0
INFO: 2014-10-28 08:01:48,068: Number of sequences is 100
INFO: 2014-10-28 08:01:48,068: Average sequence length is 10
INFO: 2014-10-28 08:01:48,068: Probability of nucleotide mutation is 0.0
INFO: 2014-10-28 08:01:48,068: Probability of A is 0.25
INFO: 2014-10-28 08:01:48,068: Probability of C is 0.25
INFO: 2014-10-28 08:01:48,068: Probability of G is 0.25
INFO: 2014-10-28 08:01:48,068: Probability of T is 0.25
INFO: 2014-10-28 08:01:48,069: Chosen motif is AG
INFO: 2014-10-28 08:01:48,069: Position of motif: 2
INFO: 2014-10-28 08:01:48,069: Position of motif: 7
INFO: 2014-10-28 08:01:48,069: Position of motif: 4
INFO: 2014-10-28 08:01:48,069: Position of motif: 4
INFO: 2014-10-28 08:01:48,069: Position of motif: 1
INFO: 2014-10-28 08:01:48,069: Position of motif: 6
INFO: 2014-10-28 08:01:48,069: Position of motif: 7
INFO: 2014-10-28 08:01:48,069: Position of motif: 2
INFO: 2014-10-28 08:01:48,069: Position of motif: 10
INFO: 2014-10-28 08:01:48,069: Position of motif: 2
INFO: 2014-10-28 08:01:48,069: Position of motif: 6
INFO: 2014-10-28 08:01:48,070: Position of motif: 6
INFO: 2014-10-28 08:01:48,070: Position of motif: 6
INFO: 2014-10-28 08:01:48,070: Position of motif: 3
INFO: 2014-10-28 08:01:48,070: Position of motif: 5
INFO: 2014-10-28 08:01:48,070: Position of motif: 7
INFO: 2014-10-28 08:01:48,070: Position of motif: 5
INFO: 2014-10-28 08:01:48,070: Position of motif: 5
INFO: 2014-10-28 08:01:48,070: Position of motif: 9
INFO: 2014-10-28 08:01:48,070: Position of motif: 3
INFO: 2014-10-28 08:01:48,070: Position of motif: 8
INFO: 2014-10-28 08:01:48,070: Position of motif: 6
INFO: 2014-10-28 08:01:48,070: Position of motif: 9
INFO: 2014-10-28 08:01:48,070: Position of motif: 5
INFO: 2014-10-28 08:01:48,070: Position of motif: 7
INFO: 2014-10-28 08:01:48,070: Position of motif: 5
INFO: 2014-10-28 08:01:48,070: Position of motif: 7
INFO: 2014-10-28 08:01:48,070: Position of motif: 5
INFO: 2014-10-28 08:01:48,070: Position of motif: 7
INFO: 2014-10-28 08:01:48,071: Position of motif: 2
INFO: 2014-10-28 08:01:48,071: Position of motif: 1
INFO: 2014-10-28 08:01:48,071: Position of motif: 5
INFO: 2014-10-28 08:01:48,071: Position of motif: 7
INFO: 2014-10-28 08:01:48,071: Position of motif: 10
INFO: 2014-10-28 08:01:48,071: Position of motif: 5
INFO: 2014-10-28 08:01:48,071: Position of motif: 1
INFO: 2014-10-28 08:01:48,071: Position of motif: 4
INFO: 2014-10-28 08:01:48,071: Position of motif: 1
INFO: 2014-10-28 08:01:48,071: Position of motif: 3
INFO: 2014-10-28 08:01:48,071: Position of motif: 7
INFO: 2014-10-28 08:01:48,071: Position of motif: 2
INFO: 2014-10-28 08:01:48,071: Position of motif: 4
INFO: 2014-10-28 08:01:48,071: Position of motif: 1
INFO: 2014-10-28 08:01:48,071: Position of motif: 3
INFO: 2014-10-28 08:01:48,071: Position of motif: 9
INFO: 2014-10-28 08:01:48,071: Position of motif: 2
INFO: 2014-10-28 08:01:48,071: Position of motif: 3
INFO: 2014-10-28 08:01:48,072: Position of motif: 6
INFO: 2014-10-28 08:01:48,072: Position of motif: 5
INFO: 2014-10-28 08:01:48,072: Position of motif: 4
INFO: 2014-10-28 08:01:48,072: Position of motif: 7
INFO: 2014-10-28 08:01:48,072: Position of motif: 4
INFO: 2014-10-28 08:01:48,072: Position of motif: 4
INFO: 2014-10-28 08:01:48,072: Position of motif: 5
INFO: 2014-10-28 08:01:48,072: Position of motif: 5
INFO: 2014-10-28 08:01:48,072: Position of motif: 1
INFO: 2014-10-28 08:01:48,072: Position of motif: 4
INFO: 2014-10-28 08:01:48,072: Position of motif: 7
INFO: 2014-10-28 08:01:48,072: Position of motif: 3
INFO: 2014-10-28 08:01:48,072: Position of motif: 2
INFO: 2014-10-28 08:01:48,072: Position of motif: 6
INFO: 2014-10-28 08:01:48,072: Position of motif: 6
INFO: 2014-10-28 08:01:48,072: Position of motif: 7
INFO: 2014-10-28 08:01:48,072: Position of motif: 2
INFO: 2014-10-28 08:01:48,072: Position of motif: 6
INFO: 2014-10-28 08:01:48,073: Position of motif: 4
INFO: 2014-10-28 08:01:48,073: Position of motif: 4
INFO: 2014-10-28 08:01:48,073: Position of motif: 4
INFO: 2014-10-28 08:01:48,073: Position of motif: 9
INFO: 2014-10-28 08:01:48,073: Position of motif: 2
INFO: 2014-10-28 08:01:48,073: Position of motif: 6
INFO: 2014-10-28 08:01:48,073: Position of motif: 4
INFO: 2014-10-28 08:01:48,073: Position of motif: 2
INFO: 2014-10-28 08:01:48,073: Position of motif: 7
INFO: 2014-10-28 08:01:48,073: Position of motif: 6
INFO: 2014-10-28 08:01:48,073: Position of motif: 3
INFO: 2014-10-28 08:01:48,073: Position of motif: 1
INFO: 2014-10-28 08:01:48,073: Position of motif: 3
INFO: 2014-10-28 08:01:48,073: Position of motif: 7
INFO: 2014-10-28 08:01:48,073: Position of motif: 4
INFO: 2014-10-28 08:01:48,073: Position of motif: 8
INFO: 2014-10-28 08:01:48,073: Position of motif: 7
INFO: 2014-10-28 08:01:48,073: Position of motif: 6
INFO: 2014-10-28 08:01:48,074: Position of motif: 1
INFO: 2014-10-28 08:01:48,074: Position of motif: 9
INFO: 2014-10-28 08:01:48,074: Position of motif: 7
INFO: 2014-10-28 08:01:48,074: Position of motif: 5
INFO: 2014-10-28 08:01:48,074: Position of motif: 8
INFO: 2014-10-28 08:01:48,074: Position of motif: 1
INFO: 2014-10-28 08:01:48,074: Position of motif: 5
INFO: 2014-10-28 08:01:48,074: Position of motif: 6
INFO: 2014-10-28 08:01:48,074: Position of motif: 8
INFO: 2014-10-28 08:01:48,074: Position of motif: 4
INFO: 2014-10-28 08:01:48,074: Position of motif: 6
INFO: 2014-10-28 08:01:48,074: Position of motif: 1
INFO: 2014-10-28 08:01:48,074: Position of motif: 6
INFO: 2014-10-28 08:01:48,074: Position of motif: 2
INFO: 2014-10-28 08:01:48,074: Position of motif: 5
INFO: 2014-10-28 08:01:48,074: Position of motif: 6
INFO: 2014-10-28 08:01:48,074: Position of motif: 9
INFO: 2014-10-28 08:01:48,075: Total number of mutations is 0
INFO: 2014-10-28 08:01:48,077: Count of A's is 282
INFO: 2014-10-28 08:01:48,077: Count of C's is 208
INFO: 2014-10-28 08:01:48,077: Count of G's is 283
INFO: 2014-10-28 08:01:48,077: Count of T's is 176
INFO: 2014-10-28 08:01:48,077: Total nucleotide count is 949
INFO: 2014-10-28 08:01:48,077: Probability of A is 0.2971548998946259
INFO: 2014-10-28 08:01:48,077: Probability of C is 0.2191780821917808
INFO: 2014-10-28 08:01:48,077: Probability of G is 0.2982086406743941
INFO: 2014-10-28 08:01:48,077: Probability of T is 0.18545837723919917