INFO: 2014-11-24 06:53:35,305: Starting EmbedMotif
INFO: 2014-11-24 06:53:35,306: Arguments sucessfully parsed
INFO: 2014-11-24 06:53:35,328: Output FASTA file is sequences_k13_d5_n20_m100_mu0.15.fasta
INFO: 2014-11-24 06:53:35,329: Motif length is 13
INFO: 2014-11-24 06:53:35,329: Number of don't cares is 5
INFO: 2014-11-24 06:53:35,329: Number of sequences is 20
INFO: 2014-11-24 06:53:35,329: Average sequence length is 100
INFO: 2014-11-24 06:53:35,329: Probability of nucleotide mutation is 0.15
INFO: 2014-11-24 06:53:35,329: Probability of A is 0.25
INFO: 2014-11-24 06:53:35,329: Probability of C is 0.25
INFO: 2014-11-24 06:53:35,329: Probability of G is 0.25
INFO: 2014-11-24 06:53:35,329: Probability of T is 0.25
INFO: 2014-11-24 06:53:35,331: Chosen motif is CC**GG*GGC**A
INFO: 2014-11-24 06:53:35,331: Position of motif: 16
INFO: 2014-11-24 06:53:35,331: Position of motif: 28
INFO: 2014-11-24 06:53:35,332: Position of motif: 34
INFO: 2014-11-24 06:53:35,332: Position of motif: 31
INFO: 2014-11-24 06:53:35,332: Position of motif: 6
INFO: 2014-11-24 06:53:35,332: Position of motif: 21
INFO: 2014-11-24 06:53:35,332: Position of motif: 75
INFO: 2014-11-24 06:53:35,332: Position of motif: 3
INFO: 2014-11-24 06:53:35,332: Position of motif: 30
INFO: 2014-11-24 06:53:35,333: Position of motif: 78
INFO: 2014-11-24 06:53:35,333: Position of motif: 2
INFO: 2014-11-24 06:53:35,333: Position of motif: 19
INFO: 2014-11-24 06:53:35,333: Position of motif: 87
INFO: 2014-11-24 06:53:35,333: Position of motif: 6
INFO: 2014-11-24 06:53:35,333: Position of motif: 62
INFO: 2014-11-24 06:53:35,333: Position of motif: 30
INFO: 2014-11-24 06:53:35,333: Position of motif: 97
INFO: 2014-11-24 06:53:35,334: Position of motif: 7
INFO: 2014-11-24 06:53:35,334: Position of motif: 81
INFO: 2014-11-24 06:53:35,334: Position of motif: 10
INFO: 2014-11-24 06:53:35,335: Total number of mutations is 305
INFO: 2014-11-24 06:53:35,335: Evaluated motif CC**GG*GGC**A
INFO: 2014-11-24 06:53:35,335: Log likelihood is 13.52742551622725
INFO: 2014-11-24 06:53:35,339: Count of A's is 464
INFO: 2014-11-24 06:53:35,339: Count of C's is 511
INFO: 2014-11-24 06:53:35,339: Count of G's is 537
INFO: 2014-11-24 06:53:35,339: Count of T's is 420
INFO: 2014-11-24 06:53:35,339: Total nucleotide count is 1932
INFO: 2014-11-24 06:53:35,339: Probability of A is 0.2401656314699793
INFO: 2014-11-24 06:53:35,339: Probability of C is 0.2644927536231884
INFO: 2014-11-24 06:53:35,339: Probability of G is 0.2779503105590062
INFO: 2014-11-24 06:53:35,339: Probability of T is 0.21739130434782608