INFO: 2015-12-15 10:53:06,525: Starting EmbedMotif
INFO: 2015-12-15 10:53:06,530: Arguments sucessfully parsed
INFO: 2015-12-15 10:53:06,531: Output FASTA file is sequences_k13_d1_n40_m100_mu0.15.fasta
INFO: 2015-12-15 10:53:06,532: Motif length is 13
INFO: 2015-12-15 10:53:06,532: Number of don't cares is 1
INFO: 2015-12-15 10:53:06,532: Number of sequences is 40
INFO: 2015-12-15 10:53:06,532: Average sequence length is 100
INFO: 2015-12-15 10:53:06,532: Probability of nucleotide mutation is 0.15
INFO: 2015-12-15 10:53:06,532: Probability of A is 0.25
INFO: 2015-12-15 10:53:06,533: Probability of C is 0.25
INFO: 2015-12-15 10:53:06,533: Probability of G is 0.25
INFO: 2015-12-15 10:53:06,533: Probability of T is 0.25
INFO: 2015-12-15 10:53:06,539: Chosen motif is GGT*CATCGGACA
INFO: 2015-12-15 10:53:06,539: Position of motif: 54
INFO: 2015-12-15 10:53:06,539: Position of motif: 85
INFO: 2015-12-15 10:53:06,540: Position of motif: 92
INFO: 2015-12-15 10:53:06,540: Position of motif: 36
INFO: 2015-12-15 10:53:06,540: Position of motif: 27
INFO: 2015-12-15 10:53:06,540: Position of motif: 45
INFO: 2015-12-15 10:53:06,540: Position of motif: 34
INFO: 2015-12-15 10:53:06,541: Position of motif: 46
INFO: 2015-12-15 10:53:06,541: Position of motif: 29
INFO: 2015-12-15 10:53:06,541: Position of motif: 106
INFO: 2015-12-15 10:53:06,541: Position of motif: 14
INFO: 2015-12-15 10:53:06,541: Position of motif: 66
INFO: 2015-12-15 10:53:06,542: Position of motif: 88
INFO: 2015-12-15 10:53:06,542: Position of motif: 34
INFO: 2015-12-15 10:53:06,542: Position of motif: 17
INFO: 2015-12-15 10:53:06,542: Position of motif: 53
INFO: 2015-12-15 10:53:06,542: Position of motif: 95
INFO: 2015-12-15 10:53:06,543: Position of motif: 6
INFO: 2015-12-15 10:53:06,543: Position of motif: 66
INFO: 2015-12-15 10:53:06,543: Position of motif: 73
INFO: 2015-12-15 10:53:06,543: Position of motif: 19
INFO: 2015-12-15 10:53:06,543: Position of motif: 1
INFO: 2015-12-15 10:53:06,544: Position of motif: 66
INFO: 2015-12-15 10:53:06,544: Position of motif: 48
INFO: 2015-12-15 10:53:06,544: Position of motif: 82
INFO: 2015-12-15 10:53:06,544: Position of motif: 34
INFO: 2015-12-15 10:53:06,544: Position of motif: 10
INFO: 2015-12-15 10:53:06,545: Position of motif: 53
INFO: 2015-12-15 10:53:06,545: Position of motif: 4
INFO: 2015-12-15 10:53:06,545: Position of motif: 14
INFO: 2015-12-15 10:53:06,545: Position of motif: 53
INFO: 2015-12-15 10:53:06,545: Position of motif: 31
INFO: 2015-12-15 10:53:06,546: Position of motif: 14
INFO: 2015-12-15 10:53:06,546: Position of motif: 60
INFO: 2015-12-15 10:53:06,546: Position of motif: 63
INFO: 2015-12-15 10:53:06,546: Position of motif: 46
INFO: 2015-12-15 10:53:06,546: Position of motif: 24
INFO: 2015-12-15 10:53:06,546: Position of motif: 79
INFO: 2015-12-15 10:53:06,547: Position of motif: 36
INFO: 2015-12-15 10:53:06,547: Position of motif: 53
INFO: 2015-12-15 10:53:06,550: Total number of mutations is 572
INFO: 2015-12-15 10:53:06,552: Evaluated motif GGT*CATCGGACA
INFO: 2015-12-15 10:53:06,552: Log likelihood is 20.986127343496477
INFO: 2015-12-15 10:53:06,574: Count of A's is 990
INFO: 2015-12-15 10:53:06,574: Count of C's is 1089
INFO: 2015-12-15 10:53:06,574: Count of G's is 1034
INFO: 2015-12-15 10:53:06,574: Count of T's is 982
INFO: 2015-12-15 10:53:06,574: Total nucleotide count is 4095
INFO: 2015-12-15 10:53:06,575: Probability of A is 0.24175824175824176
INFO: 2015-12-15 10:53:06,575: Probability of C is 0.26593406593406593
INFO: 2015-12-15 10:53:06,575: Probability of G is 0.2525030525030525
INFO: 2015-12-15 10:53:06,575: Probability of T is 0.2398046398046398