INFO: 2014-11-02 08:22:58,203: Starting EmbedMotif
INFO: 2014-11-02 08:22:58,204: Arguments sucessfully parsed
INFO: 2014-11-02 08:22:58,204: Output FASTA file is sequences_k12_d3_n10_m100_mu0.10.fasta
INFO: 2014-11-02 08:22:58,204: Motif length is 12
INFO: 2014-11-02 08:22:58,204: Number of don't cares is 3
INFO: 2014-11-02 08:22:58,204: Number of sequences is 10
INFO: 2014-11-02 08:22:58,204: Average sequence length is 100
INFO: 2014-11-02 08:22:58,205: Probability of nucleotide mutation is 0.1
INFO: 2014-11-02 08:22:58,205: Probability of A is 0.25
INFO: 2014-11-02 08:22:58,205: Probability of C is 0.25
INFO: 2014-11-02 08:22:58,205: Probability of G is 0.25
INFO: 2014-11-02 08:22:58,205: Probability of T is 0.25
INFO: 2014-11-02 08:22:58,205: Chosen motif is TCAAAG**AG*T
INFO: 2014-11-02 08:22:58,205: Position of motif: 27
INFO: 2014-11-02 08:22:58,205: Position of motif: 3
INFO: 2014-11-02 08:22:58,205: Position of motif: 58
INFO: 2014-11-02 08:22:58,205: Position of motif: 38
INFO: 2014-11-02 08:22:58,205: Position of motif: 65
INFO: 2014-11-02 08:22:58,205: Position of motif: 40
INFO: 2014-11-02 08:22:58,205: Position of motif: 4
INFO: 2014-11-02 08:22:58,205: Position of motif: 52
INFO: 2014-11-02 08:22:58,206: Position of motif: 68
INFO: 2014-11-02 08:22:58,206: Position of motif: 48
INFO: 2014-11-02 08:22:58,206: Total number of mutations is 89
INFO: 2014-11-02 08:22:58,208: Count of A's is 273
INFO: 2014-11-02 08:22:58,208: Count of C's is 227
INFO: 2014-11-02 08:22:58,208: Count of G's is 229
INFO: 2014-11-02 08:22:58,208: Count of T's is 245
INFO: 2014-11-02 08:22:58,208: Total nucleotide count is 974
INFO: 2014-11-02 08:22:58,208: Probability of A is 0.2802874743326489
INFO: 2014-11-02 08:22:58,208: Probability of C is 0.23305954825462014
INFO: 2014-11-02 08:22:58,208: Probability of G is 0.2351129363449692
INFO: 2014-11-02 08:22:58,208: Probability of T is 0.2515400410677618