INFO: 2015-11-19 09:49:09,972: Starting EmbedMotif
INFO: 2015-11-19 09:49:09,973: Arguments sucessfully parsed
INFO: 2015-11-19 09:49:09,973: Output FASTA file is sequences_k12_d2_n40_m100_mu_0.10_a0.40_c0.10_g0.20.fasta
INFO: 2015-11-19 09:49:09,973: Motif length is 12
INFO: 2015-11-19 09:49:09,973: Number of don't cares is 2
INFO: 2015-11-19 09:49:09,973: Number of sequences is 40
INFO: 2015-11-19 09:49:09,973: Average sequence length is 100
INFO: 2015-11-19 09:49:09,973: Probability of nucleotide mutation is 0.1
INFO: 2015-11-19 09:49:09,973: Probability of A is 0.4
INFO: 2015-11-19 09:49:09,973: Probability of C is 0.1
INFO: 2015-11-19 09:49:09,973: Probability of G is 0.2
INFO: 2015-11-19 09:49:09,973: Probability of T is 0.30000000000000004
INFO: 2015-11-19 09:49:09,975: Chosen motif is CTGTTA*CTT*C
INFO: 2015-11-19 09:49:09,975: Position of motif: 93
INFO: 2015-11-19 09:49:09,975: Position of motif: 5
INFO: 2015-11-19 09:49:09,975: Position of motif: 79
INFO: 2015-11-19 09:49:09,975: Position of motif: 64
INFO: 2015-11-19 09:49:09,975: Position of motif: 74
INFO: 2015-11-19 09:49:09,975: Position of motif: 29
INFO: 2015-11-19 09:49:09,975: Position of motif: 74
INFO: 2015-11-19 09:49:09,975: Position of motif: 40
INFO: 2015-11-19 09:49:09,975: Position of motif: 13
INFO: 2015-11-19 09:49:09,975: Position of motif: 57
INFO: 2015-11-19 09:49:09,975: Position of motif: 59
INFO: 2015-11-19 09:49:09,975: Position of motif: 21
INFO: 2015-11-19 09:49:09,975: Position of motif: 85
INFO: 2015-11-19 09:49:09,975: Position of motif: 3
INFO: 2015-11-19 09:49:09,975: Position of motif: 48
INFO: 2015-11-19 09:49:09,975: Position of motif: 45
INFO: 2015-11-19 09:49:09,975: Position of motif: 103
INFO: 2015-11-19 09:49:09,976: Position of motif: 51
INFO: 2015-11-19 09:49:09,976: Position of motif: 10
INFO: 2015-11-19 09:49:09,976: Position of motif: 58
INFO: 2015-11-19 09:49:09,976: Position of motif: 41
INFO: 2015-11-19 09:49:09,976: Position of motif: 37
INFO: 2015-11-19 09:49:09,976: Position of motif: 62
INFO: 2015-11-19 09:49:09,976: Position of motif: 83
INFO: 2015-11-19 09:49:09,976: Position of motif: 52
INFO: 2015-11-19 09:49:09,976: Position of motif: 72
INFO: 2015-11-19 09:49:09,976: Position of motif: 77
INFO: 2015-11-19 09:49:09,976: Position of motif: 46
INFO: 2015-11-19 09:49:09,976: Position of motif: 53
INFO: 2015-11-19 09:49:09,976: Position of motif: 1
INFO: 2015-11-19 09:49:09,976: Position of motif: 69
INFO: 2015-11-19 09:49:09,976: Position of motif: 59
INFO: 2015-11-19 09:49:09,976: Position of motif: 71
INFO: 2015-11-19 09:49:09,976: Position of motif: 8
INFO: 2015-11-19 09:49:09,976: Position of motif: 67
INFO: 2015-11-19 09:49:09,976: Position of motif: 37
INFO: 2015-11-19 09:49:09,977: Position of motif: 76
INFO: 2015-11-19 09:49:09,977: Position of motif: 62
INFO: 2015-11-19 09:49:09,977: Position of motif: 79
INFO: 2015-11-19 09:49:09,977: Position of motif: 94
INFO: 2015-11-19 09:49:09,977: Total number of mutations is 433
INFO: 2015-11-19 09:49:09,978: Evaluated motif CTGTTA*CTT*C
INFO: 2015-11-19 09:49:09,978: Log likelihood is 19.45678997741957
INFO: 2015-11-19 09:49:09,986: Count of A's is 1458
INFO: 2015-11-19 09:49:09,986: Count of C's is 466
INFO: 2015-11-19 09:49:09,986: Count of G's is 806
INFO: 2015-11-19 09:49:09,986: Count of T's is 1288
INFO: 2015-11-19 09:49:09,986: Total nucleotide count is 4018
INFO: 2015-11-19 09:49:09,986: Probability of A is 0.3628670980587357
INFO: 2015-11-19 09:49:09,986: Probability of C is 0.11597809855649577
INFO: 2015-11-19 09:49:09,986: Probability of G is 0.20059731209556994
INFO: 2015-11-19 09:49:09,986: Probability of T is 0.3205574912891986