INFO: 2014-12-14 10:18:53,531: Starting EmbedMotif
INFO: 2014-12-14 10:18:53,533: Arguments sucessfully parsed
INFO: 2014-12-14 10:18:53,535: Output FASTA file is sequences_k10_d2_n20_m120_mu0.10.fasta
INFO: 2014-12-14 10:18:53,536: Motif length is 10
INFO: 2014-12-14 10:18:53,536: Number of don't cares is 2
INFO: 2014-12-14 10:18:53,536: Number of sequences is 20
INFO: 2014-12-14 10:18:53,536: Average sequence length is 120
INFO: 2014-12-14 10:18:53,536: Probability of nucleotide mutation is 0.1
INFO: 2014-12-14 10:18:53,536: Probability of A is 0.25
INFO: 2014-12-14 10:18:53,536: Probability of C is 0.25
INFO: 2014-12-14 10:18:53,536: Probability of G is 0.25
INFO: 2014-12-14 10:18:53,536: Probability of T is 0.25
INFO: 2014-12-14 10:18:53,537: Chosen motif is AGCCTCC**T
INFO: 2014-12-14 10:18:53,537: Position of motif: 55
INFO: 2014-12-14 10:18:53,537: Position of motif: 32
INFO: 2014-12-14 10:18:53,537: Position of motif: 54
INFO: 2014-12-14 10:18:53,537: Position of motif: 81
INFO: 2014-12-14 10:18:53,538: Position of motif: 85
INFO: 2014-12-14 10:18:53,538: Position of motif: 32
INFO: 2014-12-14 10:18:53,538: Position of motif: 44
INFO: 2014-12-14 10:18:53,538: Position of motif: 57
INFO: 2014-12-14 10:18:53,538: Position of motif: 47
INFO: 2014-12-14 10:18:53,538: Position of motif: 129
INFO: 2014-12-14 10:18:53,538: Position of motif: 29
INFO: 2014-12-14 10:18:53,538: Position of motif: 69
INFO: 2014-12-14 10:18:53,538: Position of motif: 45
INFO: 2014-12-14 10:18:53,538: Position of motif: 30
INFO: 2014-12-14 10:18:53,538: Position of motif: 98
INFO: 2014-12-14 10:18:53,538: Position of motif: 44
INFO: 2014-12-14 10:18:53,538: Position of motif: 58
INFO: 2014-12-14 10:18:53,539: Position of motif: 87
INFO: 2014-12-14 10:18:53,539: Position of motif: 103
INFO: 2014-12-14 10:18:53,539: Position of motif: 62
INFO: 2014-12-14 10:18:53,539: Total number of mutations is 241
INFO: 2014-12-14 10:18:53,540: Evaluated motif AGCCTCC**T
INFO: 2014-12-14 10:18:53,540: Log likelihood is 14.502064221760463
INFO: 2014-12-14 10:18:53,547: Count of A's is 591
INFO: 2014-12-14 10:18:53,547: Count of C's is 621
INFO: 2014-12-14 10:18:53,547: Count of G's is 550
INFO: 2014-12-14 10:18:53,547: Count of T's is 630
INFO: 2014-12-14 10:18:53,547: Total nucleotide count is 2392
INFO: 2014-12-14 10:18:53,547: Probability of A is 0.24707357859531773
INFO: 2014-12-14 10:18:53,547: Probability of C is 0.25961538461538464
INFO: 2014-12-14 10:18:53,548: Probability of G is 0.229933110367893
INFO: 2014-12-14 10:18:53,548: Probability of T is 0.2633779264214047